Cell Parameter Configuration¶
Configure the cell parameters for each trial
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class
PyLongQt.CellParameters.PvarsCell¶ Base class for protocol specific pvars, pvars control cell parameters, which are values set at the beginning of a simulation and are not changed throughout. Different trials may have different parameter values. pvars provides a simple class to control these cell parameter settings.
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class
Distribution¶ Possible distributions for cell parameter rules
Members:
none : No distribution
normal : Gaussian distribution \(N(\mu, \sigma^2)\)
lognormal : Log-Gaussian distribution \(exp(N(\mu, \sigma^2))\)
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lognormal= Distribution.lognormal¶
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property
name¶ handle) -> str
- Type
(self
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none= Distribution.none¶
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normal= Distribution.normal¶
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class
IonChanParam¶ A rule for a cell parameter
Depending on the distribution the rule’s values have different meanings
Distribution values:
- none
- val1
The starting value
- val2
The increment amount for each trial (may be positive or negative)
- normal
- val1
The mean \(\mu\) (may be positive or negative)
- val2
The standard deviation \(\sigma\) (must be positive)
- lognormal
- val1
The mean of the underlying normal distribution \(\mu\) (may be positive or negative)
- val2
The standard deviation of the underlying normal distribution \(\sigma\) (must be positive)
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property
dist¶ The distribution, which alters the meaning of the other members
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property
val0¶ Depends on distribution, see class description
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property
val1¶ Depends on distribution, see class description
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__delitem__(self: PyLongQt._PyLongQt.CellParameters.PvarsCell, name: str) → None¶ - Delete a specific rule
- name
The cell parameter’s name
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__getitem__(self: PyLongQt._PyLongQt.CellParameters.PvarsCell, name: str) → LongQt::PvarsCell::IonChanParam¶ - Retrieve the rule for a cell parameter
- name
The cell parameter’s name
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__iter__(self: PyLongQt._PyLongQt.CellParameters.PvarsCell) → iterator¶ Iterate over cell parameters
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__setitem__(self: PyLongQt._PyLongQt.CellParameters.PvarsCell, name: str, parameter: LongQt::PvarsCell::IonChanParam) → None¶ - Insert a new rule to define cell parameter values
- name
The cell parameter’s name
- parameter
The rule which defines how the cell parameter will be set
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calcIonChanParams(self: PyLongQt._PyLongQt.CellParameters.PvarsCell) → None¶ Re-calculate the ion channel parameters
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clear(self: PyLongQt._PyLongQt.CellParameters.PvarsCell) → None¶ Delete all of the rules
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lognormal= Distribution.lognormal¶
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none= Distribution.none¶
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normal= Distribution.normal¶
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setIonChanParams(self: PyLongQt._PyLongQt.CellParameters.PvarsCell) → None¶ Apply ion channel parameters to cell(s)
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class
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class
PyLongQt.CellParameters.PvarsCurrentClamp¶ Pvars specialized for the current clamp protocol
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class
PyLongQt.CellParameters.PvarsGrid¶ Pvars specialized for the grid protocol
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class
MIonChanParam¶ IonChanParam specialized for the gird protocol, this subclass will be created automatically when an IonChanParam is assigned to a pvars
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property
cells¶ The cells and the values they will be set to
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property
maxDist¶ The maximum distance from the start that the rule will be applied
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property
maxVal¶ The maxiumum value the rule will set the parameter for any cell to
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property
startCells¶ The starting cells. These are the first cells the rule is applied to, and the rule step is appliedoutward until the maxiumum distance is obtained.
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property
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setMaxDistAndVal(self: PyLongQt._PyLongQt.CellParameters.PvarsGrid, name: str, maxDist: int, maxVal: float) → None¶ Set the maximum distance and the maximum value for a rule
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setStartCells(self: PyLongQt._PyLongQt.CellParameters.PvarsGrid, name: str, startCells: Set[Tuple[int, int]]) → None¶ Set the cell locations in the grid that the rule will start from
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class
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class
PyLongQt.CellParameters.PvarsVoltageClamp¶ Pvars specialized for the current clamp protocol