:orphan:



.. _sphx_glr_auto_examples:

==================
Starter Examples
==================

These examples illustrate the basic usage of PyLongQt to 
setup and run electrophysiology simulations from single
cells to grids of cells. We will show the basic usage of the
three different expiremental protocols currently implemented
in LongQt as well as a few examples of more advanced options.
 





.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="This example illustrates how to setup and run a current clamp simulation,  also known as a pace...">

.. only:: html

 .. figure:: /auto_examples/images/thumb/sphx_glr_plot_1_current_clamp_simple_example_thumb.png
     :alt: 1. Simple Current Clamp

     :ref:`sphx_glr_auto_examples_plot_1_current_clamp_simple_example.py`

.. raw:: html

    </div>


.. toctree::
   :hidden:

   /auto_examples/plot_1_current_clamp_simple_example

.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="This example illustrates how to setup and run a voltage clamp simulation. These simulations hol...">

.. only:: html

 .. figure:: /auto_examples/images/thumb/sphx_glr_plot_2_voltage_clamp_simple_example_thumb.png
     :alt: 2. Simple Voltage Clamp

     :ref:`sphx_glr_auto_examples_plot_2_voltage_clamp_simple_example.py`

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    </div>


.. toctree::
   :hidden:

   /auto_examples/plot_2_voltage_clamp_simple_example

.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="This example illustrates how to setup and run a simple 1D grid simulation,  also known as a fib...">

.. only:: html

 .. figure:: /auto_examples/images/thumb/sphx_glr_plot_3_1D_grid_simple_example_thumb.png
     :alt: 3. 1D Grid Simulation

     :ref:`sphx_glr_auto_examples_plot_3_1D_grid_simple_example.py`

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    </div>


.. toctree::
   :hidden:

   /auto_examples/plot_3_1D_grid_simple_example
.. raw:: html

    <div class="sphx-glr-clear"></div>



.. _sphx_glr_auto_examples_advanced_examples:

===================
Advanced Examples
===================

These examples illustrate some of the more advanced features of LongQt
including setups that we frequently use for expirementation. They build
off of the simple examples, so if you are unfamilar with LongQt it is
best to start off there.



.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="This example illustrates how to setup and run a 2D grid simulation, using  options to modify co...">

.. only:: html

 .. figure:: /auto_examples/advanced_examples/images/thumb/sphx_glr_plot_2D_grid_factors_conductances_thumb.png
     :alt: 2D Grid with factors and conductances

     :ref:`sphx_glr_auto_examples_advanced_examples_plot_2D_grid_factors_conductances.py`

.. raw:: html

    </div>


.. toctree::
   :hidden:

   /auto_examples/advanced_examples/plot_2D_grid_factors_conductances

.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="This example illustrates how to conduct parameter sensitivity analysis. The  purpose of conduci...">

.. only:: html

 .. figure:: /auto_examples/advanced_examples/images/thumb/sphx_glr_plot_parameter_sensitivity_analysis_thumb.png
     :alt: Parameter Sensitivity Analysis

     :ref:`sphx_glr_auto_examples_advanced_examples_plot_parameter_sensitivity_analysis.py`

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    </div>


.. toctree::
   :hidden:

   /auto_examples/advanced_examples/plot_parameter_sensitivity_analysis

.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="This example illustrates how to setup a simulation which modifies the protocol while it is runn...">

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 .. figure:: /auto_examples/advanced_examples/images/thumb/sphx_glr_plot_variable_frequency_thumb.png
     :alt: Variable Pacing Frequency

     :ref:`sphx_glr_auto_examples_advanced_examples_plot_variable_frequency.py`

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    </div>


.. toctree::
   :hidden:

   /auto_examples/advanced_examples/plot_variable_frequency
.. raw:: html

    <div class="sphx-glr-clear"></div>



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 .. container:: sphx-glr-footer
    :class: sphx-glr-footer-gallery


  .. container:: sphx-glr-download sphx-glr-download-python

    :download:`Download all examples in Python source code: auto_examples_python.zip </auto_examples/auto_examples_python.zip>`



  .. container:: sphx-glr-download sphx-glr-download-jupyter

    :download:`Download all examples in Jupyter notebooks: auto_examples_jupyter.zip </auto_examples/auto_examples_jupyter.zip>`


.. only:: html

 .. rst-class:: sphx-glr-signature

    `Gallery generated by Sphinx-Gallery <https://sphinx-gallery.github.io>`_